Visual Explanation
Process Search Mode
Rules
- If no field key is given for all keywords, then search with Process Search Mode, otherwise search with Model Search Mode.
- Search words are case-sensitive.
- If no operator is supplied, then join with "AND" operator.
- Search words are case-sensitive.
- If no operator is supplied, then join with "AND" operator.
Operator
| Operator | Abbr. | Description |
|---|---|---|
| OR | \\ | A or B |
| AND | && | A and B |
If no operator is defined, default value is "AND".
Examples
Model Search Mode
Rules
- Keywords are case-sensitive.
- If no field key is supplied to the search words, then try to match all keywords with the search words.
- If no field key is supplied to the search words, then try to match all keywords with the search words.
Field Keys
| Key | Abbr. | Description |
|---|---|---|
| pubmed: | The pubmed id | |
| year: | y: | The year of publication |
| author: | au: | The author of publication |
| publication: | p: | The journal name |
| entity: | e: | The name of entity (e.g. p53) |
| title: | ti: | The title of publication |
| journal: | j: | The journal of publication |
| type: | ty: | The type of entity (mRNA,complex,protein) |
| ptype: | pty: | The type of process (phosphorylation,binding) |
| location: | loc: | The location of entity and process (nucleus,cytoplasm) |
Operator
| Operator | Abbr. | Description |
|---|---|---|
| OR | \\ | A or B |
| AND | && | A and B |
If no operator is defined, default value is "OR".
Sort keys
| Sort | Abbr. | Sort by |
|---|---|---|
| up: | u: | ascendent |
| down: | d: | desendent |
Sort target
| Target | Abbr. | Sort by |
|---|---|---|
| authors | a | author |
| journal | j | journal |
| year | y | year |
| pubmedid | p | pubmedid |
Examples
entity:LPS entity:AP-1
The above means entity:LPS or entity:AP-1
If many spaces are put, then shorten to be one space.
entity:LPS entity:AP-1 → entity:LPS entity:AP-1
entity:[LPS \[ AP-1]
For search string with [, use an escape character \ (i.e., \[]).
